Package: rrnni
Title: Manipulate with RNNI Tree Space
Version: 0.1.1
Date: 2023-08-26
Authors@R: 
    c(person(
        c("Jiří", "C."), "Moravec", 
        email = "jiri.c.moravec@gmail.com",
        role = c("aut", "cre")
        ),
    person(
        "Lena", "Collienne",
        email = "lena@lenacoll.de",
        role = c("aut")
        ))
Description: Calculate RNNI distance between and manipulate with ranked
        trees. RNNI stands for Ranked Nearest Neighbour Interchange and
        is an extension of the classical NNI space (space of trees
        created by the NNI moves) to ranked trees, where internal nodes
        are ordered according to their heights (usually assumed to be
        times). The RNNI distance takes the tree topology into account,
        as standard NNI does, but also penalizes changes in the order
        of internal nodes, i.e. changes in the order of times of
        evolutionary events. For more information about the RNNI space
        see: Gavryushkin et al. (2018) <doi:10.1007/s00285-017-1167-9>,
        Collienne & Gavryushkin (2021)
        <doi:10.1007/s00285-021-01567-5>, Collienne et al. (2021)
        <doi:10.1007/s00285-021-01685-0>, and Collienne (2021)
        <http://hdl.handle.net/10523/12606>.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: methods, ape
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
URL: https://rrnni.biods.org/
BugReports: https://github.com/biods/rrnni/issues
Repository: https://biods.r-universe.dev
Date/Publication: 2023-08-25 13:18:51 UTC
RemoteUrl: https://github.com/biods/rrnni
RemoteRef: HEAD
RemoteSha: aee39362aa355fd56c0c6ac725b1a2a560f43570
NeedsCompilation: yes
Packaged: 2026-10-01 10:03:32 UTC; root
Author: Jiří C. Moravec [aut, cre],
  Lena Collienne [aut]
Maintainer: Jiří C. Moravec <jiri.c.moravec@gmail.com>
Depends: R (>= 4.1.0)